I meant taking the whole rear panel out, to avoid having a seam that could open up from being torqued around by the motor.
Sorry to hear about your dad. I understand getting burnt out on the project.
It looks like the planned cut will be along the bottom edge of the transom. I think this will make a bad stress point because all of the leverage is going to be right on the seam. Maybe cut a piece of aluminum to fit the whole transom area on the inside, cutting around the braces, and then do the sheet on the outside to replace what you cut out. Talk to your cousin about that, and what he thinks will be a good structure.
Why is the coosa only half the height of the whole transom area?