Re: losing bottom
It's most likely a "secure mount" issue unless something is causing turbulence(air) prior to transducer.air in water will screw it up.You might try switching frequency's & playing with the range to see if you can improve sounder performance.
It's recommended that transducer cable not be ran in direct contact with other electrical wiring,but I don't know what kind of interference would be caused if any.(I've ran them tie-wrapped to battery cables before and not really seen any problems).But it might be something to check.I guess if your alternator was increasing output when you throttled up that may be a possible scenario?
Good luck.