The shuttle valve as long as the correct o rings were installed should center and positioned itself inside the "tunnel". However. since the the trim pistons rises all the way and when it is time for the tilt to rise the motor sounds it is struggling, then this could mean either the motor is underated. Correct me if I remember this correctly, but this motor and VB unit is a brand new unit, right? And it is one of those aftermarket Asian model, right? If you still have the old motor and VB unit, you might want to rebuild it and try it instead. If the problem persists, then you know it is not the motor or VB but more like the tilt cylinder.
The biggest clue I can see from your previous post is that the motor is "struggling" or seems to lose power when it is time to tilt the motor. Had this been a tilt cylinder or VB motor, I would say the motor rpm should stay the same and not slow down or struggle. Or had it been a valve problem not closing properly, the motor should instead increase in rpm instead of struggling. Just my 2 cents.