Re: 1990 3hp johsnon overheat
Possible problem areas would be:
1 - Something overlooked in the water pump repair.
2 - Water tube got forced up slightly, not fully inserted in pump grommet.... OR tube hit pump grommet improiperly causing it to fold over.
3 - Top water tube grommet swelling, acting as a shut off valve.
4 - Head gasket leaking slightly, cause a stalemate. Water coming up, combustion going down, water sits still.
I'd suggest removing the lower unit and cylinder head, then forcing air (or water) up the water tube to check for obstructions. This would also allow you to inspect the head gasket, the sealing surfaces of the head and block, and while you're there, clean out the water passages.