Check AC voltage across the two yellow wires that are connected to the rectifier input (usually the rectifier will have a sign like ~ or it will say input, AC voltage). And yes, you measure the voltage while engine is running and wires fully connected.
Note the voltage reading. Next read the output voltage (DC voltage). Raise engine rpm to at least 1500 (fast idle setting on the control throttle should do it) Note both voltages. Shut down motor now read the rectifier or battery voltage again and compare with the previous reading from the rectifier output. The rectifier output should be higher.