Even though its not paint, its still the tinted poly dust thats being removed as you buff. Same principle that applies to buffing anything. Dust just doesnt come out of no where magically, pads are course and even with wax for lube are essentially are a wet/dry sandpaper but extremely fine spinning at thousands or rpm's. Most the pad getting darker on a 2+stage layering is dust, because of paint/tint's protective clear coating. Im new to boats but I know people use car paint, tractor paint, use clear over gel coat, ect.. But if its sprayed as a 1 stage layer, as from my understanding most gel coat is. You are sanding the tint itself. The whole point of pointing that out is to explain why you dont go from a dark color/tint to a lighter one with the same pad. Regardless of materiel sprayed buffing is the same game. Only variables are how the material was mixed/layered, and age/condition of the thing your buffing.
Having said all that if the gel coat doesnt allow the tint to stain darker color to lighter, or is hard enough to prevent material loss. Then no worries, Ive never buffed gel coat, but hearing that does throw a red flag to my ears lol. Could just go buy another $20 pad, and avoid the whole situation all together. I try to have a few extra new pads on hand at all times, but I go through them quick during the summer.