Well, now I think there's something else going on. I installed the 130A alt. and nothing changed. I'm getting around 11V on my meter off the battery. Doesn't look like it's charging. At this point I have no idea. Electric stuff is not my forte'.
Regarding the "going to a 4 AWG wire," how would I do that when it's all wrapped up in the wiring harness? And this fuse on the starter, I have no idea what you're talking about. Sorry, just not familiar enough with this stuff.
As I was thinking all along. Start with your batteries, hopefully your have at least two in parallel. Check them to make sure there are holding a charge, give them a couple hours off the charger before checking.
If your using the meter on the boat, this could be suspect. Need to use a handheld meter.
Factory ALT's have an output, ground, power and sense leads going to them. If you have a one wire ALT (only uses one wire) then the regulation is all done inside. To run a larger wire you need to remove the ALT output lead from the ALT, also remove the other end from the fuse on the starter, and tape them up. Run a new wire from the ALT output terminal all the back to the starter fuse. Your current fuse is 90amps, and you could leave it there, but it will blow if the ALT ever needs to put out more then the fuse can take
Edit: also check the reading at the ALT