A couple thing...Sea Ray, even up to some of their larger Sundecks seems to come with a 5.0 when you'd expect to see a 5.7. I am at a loss as to why that is the case...I've seen this discussion on the Sea Ray sight. Maybe it is just a Minnesota thing...I can't figure it out. Anyway, because 2001 is the final year of TBI production when MPI took over in 2002 for small blocks and V6's, I would look for a 2002 or newer with MPI. It is more HP as mentioned but also capable of Smartcraft with the additional technology. Oddly enough then, It seem Sea Ray was an early adapter of Smart Craft guages on their boats when the competitors don't seem to ever have them on those early MPI 2000's models yet the Sea Ray will still have a base 5.0. My logic on MPI aside from it having more modern technology is that it is 2017 and there are millions of early 2000's boats out there with MPI ready to be negotiated. If it was say 2007 and MPI in small blocks (because MPI was available on big blocks several years prior to 2002) had only been around for 5 or 6 years, then I'd have a different take on TBI.
As it turns out, my sig boat has the 5.7 MPI and the previous owner must be the only person to order this boat with a Bravo 1 instead of a Bravo 3. I guess I forgot to ask him why he went B1 when the B3 price was negligible once you got to the Bravo level. Anyway, it tends to bow wander and annoys me at times and the low speed handling could've been improved with a B3 as well but the B1 is supposed to get a couple more clicks at the top end which is when you really don't 'need' it.
The other thing is that those 2002, 2003 ish years a lot of boats got a massive redesign up to the next generation of hulls and technologies. It's when the 90's technology went out and the next gen was ushered in. Starboard replaced wood, flow through seat materials became more widely used, fiberglass floors became standards along with snap in carpet. That is to say that just a couple years newer boat will get you a next gen boat that was likely made for many more years and also won't be as dated.